PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012531
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 218aa    MW: 23942.9 Da    PI: 8.0387
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012531genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.42.9e-399108199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkCa+dC++apyf +eq p++fa++hk+FGasnv+k+l ++p  +r +a+ +++yeA+ar+rdPvyG+v++i +lqqq+++l+++++++
  DCAR_012531   9 PCGACKFLRRKCASDCIFAPYFTSEQgPARFAAIHKVFGASNVSKMLVNIPVADRCEAVVTIAYEAQARIRDPVYGCVSHIYALQQQVASLQSQVNQV 106
                  7***********************9999*******************************************************************998 PP

       DUF260  98 ke 99 
                  k+
  DCAR_012531 107 KS 108
                  75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.2068110IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-399107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MATSGTSSPC GACKFLRRKC ASDCIFAPYF TSEQGPARFA AIHKVFGASN VSKMLVNIPV  60
ADRCEAVVTI AYEAQARIRD PVYGCVSHIY ALQQQVASLQ SQVNQVKSLM AQGLMDSRNE  120
ENPWQPGNPL TATTNHYPGY NFMNNNYVSP QSSPDSINHY QDNKEGVMSL DDIQNRYNRL  180
VSLQGQGESC GYGRKRASGN IDQLGELQEL ASRMMNK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521022.12e-81PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB75e-72LBD16_ARATH; LOB domain-containing protein 16
TrEMBLB9S4L62e-81B9S4L6_RICCO; LOB domain-containing protein, putative
STRINGPGSC0003DMT4000251353e-77(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.12e-63lateral organ boundaries-domain 16